Publications

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If you have used ATB in a publication and would like to add it to this list, please contact us at contact@allthebacteria.org

The following publications use AllTheBacteria:

Host interactions of bioactive molecules produced by Klebsiella spp.

Anne L. McCartney, Lesley Hoyles, Microbiota and Host, 2025

BWT construction and search at the terabase scale

Heng Li, Bioinformatics, 2025

MUSET: set of utilities for constructing abundance unitig matrices from sequencing data

Riccardo Vicedomini, Francesco Andreace, Yoann Dufresne , Rayan Chikhi, Camila Duitama González, Bioinformatics, 2025

Global dissemination of npmA-mediated pan-aminoglycoside resistance via a mobile genetic element in Gram-positive bacteria

Carlos Serna et al, Nature Communications, 2025

AllTheBacteria – all bacterial genomes assembled, available, and searchable

Martin Hunt, Leandro Lima, Daniel Anderson, George Bouras, Michael Hall, Jane Hawkey, Oliver Schwengers, Wei Shen, John A. Lees, Zamin Iqbal; bioRxiv, 2025