Documentation

• Overview
• Metadata and QC
• OSF links
• SQLite metadata
• Assemblies
• Species identification
• Annotation
• Antimicrobial resistance
• Defense systems
• Biosynthetic gene clusters
• Hypothetical protein structures
• WhatsGNU protein allele frequencies
• Species specific typing
• Archaea
• Sequence alignment with LexicMap
• Sequence distances with sketchlib
• Contributing to AllTheBacteria
• Batch downloading from OSF
• FAQ
• Release history
• Migration from EBI FTP to OSF